Reproducibility in Action!
The COMBINE archive library was developed by Frank Bergmann. Excellent
tool to add support for COMBINE archives in C# projects.
PySCeS provides a variety of tools for the analysis of cellular systems.
It supports COMBINE archives (reading/exporting?)
The CombineArchive WebInterface is a web based user interface to create, modify, explore, and share COMBINE archives.
PySCeS CBMPy is a new platform for constraint based modelling and analysis. It supports COMBINE archives (reading/exporting?)
The SED-ML Web Tool can read and export COMBINE archives. A sophisticated API allows for automatic runs of simulation studies encoded in the archives.
Tellurium (te) is a Python environment based on spyder2 IDE. te can read and export COMBINE archives. A sophisticated API allows for automatic runs of simulation studies encoded in the archives.
JWS Online is an online platform for construction, modification, simulation, and storage of kinetic models.
The Physiome Model Repository is a central resource for free-access computational models, primarily in CellML format.
VCell is tool for modelling and analysis of cell biological systems. It supports multiple biophysical mechanisms, including reaction kinetics, diffusion, flow, membrane transport, lateral membrane diffusion and electrophysiology.
Implement support for COMBINE archives in your software tool!
The COMBINE archive library is developed under a Simplified BSD license and can be integrated in C# projects.
libCombine is developed under a Simplified BSD license and can be integrated in C++ projects.
The CombineArchive library is licensed under a BSD-3-Clause and can be integrated in Java projects.
Combine Archive is developed under an Apache V2.0 license and can be integrated in Java projects.
pyCombineArchive is licensed under a BSD-3-Clause and can be integrated in Python projects.
